galaxyproject/galaxy
Data intensive science for everyone.
A star delta has been computed for 62,252 of 63,106 tracked repositories in this period, and only those can be ranked in it.
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Data intensive science for everyone.
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
Official code repository for GATK versions 4 and up
BAM Statistics, Feature Counting and Annotation
Python library to parse, format, validate, normalize, and map sequence variants according to HGVS Nomenclature (https://hgvs-nomenclature.org/).
Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement
MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.
SPAdes Genome Assembler
Structural variant toolkit for VCFs
Genomics Extension for SQLite
That's all 11 repositories in this period.